[Biopython-dev] Notification: incoming/33

biopython-bugs at bioperl.org biopython-bugs at bioperl.org
Tue May 22 16:57:19 EDT 2001

JitterBug notification

chapmanb changed notes

Message summary for PR#33
	From: sarah at k-k.oz.au
	Subject: str matrix in Bio.SubsMat.MatrixInfo
	Date: Mon, 21 May 2001 21:27:18 -0400
	0 replies 	0 followups
	Notes: Ooops, my fault -- too much automation and not enough sanity checking
on my part :-). The pages that were used to generate this don't even
exist any more, so the change was made directly to MatrixInfo.py,
str is now called structure. Sarah, thanks for finding this!


>From sarah at k-k.oz.au Mon May 21 21:27:19 2001
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Date: Mon, 21 May 2001 21:27:18 -0400
Message-Id: <200105220127.f4M1RIb30039 at pw600a.bioperl.org>
From: sarah at k-k.oz.au
To: biopython-bugs at bioperl.org
Subject: str matrix in Bio.SubsMat.MatrixInfo

Full_Name: Sarah Kummerfeld
Module: Bio.SubsMat.MatrixInfo
Version: biopython-1.00a1 -- not sure of specific module version
OS: linux
Submission from: metra.ucc.usyd.edu.au (

There is a matrix called str in the Bio.SubsMat.MatrixInfo
set. This causes problems with the python
str() function! 

I couldn't find the get_matrices.py code that
is referred to as having generated these
substitution matrices. So i'm not sure if
it should be changed there or in MatrixInfo


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