[Bioperl-l] standardize shebang line in bioperl scripts

[Carnë Draug]

On Tue, 4 Sep 2018 at 18:51, Fields, Christopher J
<cjfields at illinois.edu> wrote:
>
> On September 4, 2018 at 12:31:28 PM, Carnë Draug (carandraug+dev at gmail.com) wrote:
>
>> On Tue, 4 Sep 2018 at 16:43, Fields, Christopher J
> <cjfields at illinois.edu> wrote:
>> > We’re probably overdue for a patch release. I still see some odd
>> > random travis-ci fails with bioperl but restarting them seems to fix
>> > them, not sure why. I do see a more serious fail on Bio-EUtilities
>> > that’s worth investigating, something that is going on with espell:
>> >
>> > https://travis-ci.org/bioperl/Bio-EUtilities
>> >
>>
>> That's not really because of my change. Looking at the build history
>> [1], it has been failing for 9 months, since this change [2].
>>
>> I have fixed it now [3].
>>
>> Carnë
>>
> [1] https://travis-ci.org/bioperl/Bio-EUtilities/builds
> [2] https://github.com/bioperl/Bio-EUtilities/commit/f5ad9e6c4d95
> [3] https://github.com/bioperl/Bio-EUtilities/commit/c723180987c3
>
> \o/   Thanks for catching that!
>
> chris

The fix was based on your previous comments that some errors in the
XML should not be fatal.  Can you share such file to be added to the
test suite?

Carnë