[Bioperl-l] free software to estimate dS and dN in pairwise comparisons

Horacio Montenegro h.montenegro at gmail.com
Tue Jan 10 20:38:43 UTC 2017

What is free for academic use only? PAML is distributed under GNU GPL
v3 (see "introduction" at [1]), so not restricted to academic use. And
BioPerl is distributed under a dual-license GNU / Artistic License
(see "license" at [2]).

best, Horacio

[1] http://abacus.gene.ucl.ac.uk/software/paml.html
[2] http://search.cpan.org/~cjfields/BioPerl-Run-1.007001/

On Tue, Jan 10, 2017 at 6:19 PM, Carnë Draug <carandraug+dev at gmail.com> wrote:
> I am looking for a piece of free software to estimate synonymous and
> non-synonymous (dS and dN) distances between aligned sequences.
> I have found codeml on Bio::Tools::Run::Phylo::PAML::Codeml but that
> is not free software (it's for academic use only).  Can anyone suggest
> an alternative?
> Thank you
> Carnë
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