[Bioperl-l] issue writing to pipe with bio sequoia

[Stephane Plaisance | VIB |]

I will do
maybe some adjustments should be done in order for people to find that new page, I did not find it in google when I searched for info. ( a link in the old page???)

Best
;-)

 <http://www.nucleomics.be/>      	Stephane Plaisance, Ph.D

Address: Herestraat 49, O&N4, Post Box 816, Room nr. 404-24 / 08.428, 3000 Leuven - Belgium
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Web: www.nucleomics.be <http://www.nucleomics.be/>
> On 01 Jun 2016, at 18:12, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> 
> Hi Stephane,
> 
> The website source for that page is now here:
> 
> https://github.com/bioperl/bioperl.github.io/blob/master/howtos/SeqIO_HOWTO.md <https://github.com/bioperl/bioperl.github.io/blob/master/howtos/SeqIO_HOWTO.md>
> 
> You can edit it within the GitHub web interface and make a pull request (remember to check the preview).
> 
> Chris etc: Can you apply something like this to add an edit button/link to each page?
> 
> https://github.com/biopython/biopython.github.io/issues/14 <https://github.com/biopython/biopython.github.io/issues/14>
> https://github.com/biopython/biopython.github.io/commit/a2b3c5bd551fbfe8b41192d4ae6660b4bb2a68bb <https://github.com/biopython/biopython.github.io/commit/a2b3c5bd551fbfe8b41192d4ae6660b4bb2a68bb>
> 
> Regards,
> 
> Peter
> 
> On Wed, Jun 1, 2016 at 9:28 AM, Stephane Plaisance | VIB | <stephane.plaisance at vib.be <mailto:stephane.plaisance at vib.be>> wrote:
> Thanks a lot Chris,
> 
> Your code example is much more instructive than the text I found on the IO man pages.
> If someone has access to (http://bioperl.org/howtos/SeqIO_HOWTO.html <http://bioperl.org/howtos/SeqIO_HOWTO.html>) and could edit some examples for saving to bgzip it would probably help others.
> My code now works like a charm and I generate smaller compressed and tabix index-able bgzip Fasta instead of huge plain files.
> 
> THANKS to ALL who helped me
> 
> Stephane
> 

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