[Bioperl-l] frac_identical | Bio::Search::Tiling::MapTiling

[Thiago Venancio]

Solved. 
Thanks.

On Friday, February 27, 2015 at 4:26:23 PM UTC-3, Thiago Venancio wrote:
>
> Hi all,
>
> Bio::Search::Tiling::MapTiling frac_identical() is calculating it over the 
> total query length instead of the aligned length in a a BLASTN. Below is 
> the code I am using:
>
> while( my $hit = $result->next_hit ) {
>      my $tiling = Bio::Search::Tiling::MapTiling->new($hit);
>      my $id = $tiling->frac_identical(-type => 'query', -action => 
> 'exact');
> }
>
> Does anyone know how to change this behavior ?
>
> Best,
> Thiago
>
>
>
>
>
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