[Bioperl-l] Installing Bioperl on UCLA cluster

[Fields, Christopher J]

You need to install those missing modules, that’s likely the reason for the test failures.

If you are installing to a local (user) directory I highly suggest using local::lib in combination with cpanminus (cpanm).  It will save you a lot of pain.

http://stackoverflow.com/questions/2980297/how-can-i-use-cpan-as-a-non-root-user

chris

On May 21, 2014, at 2:06 PM, Allison Fritts-Penniman <allisonfp at gmail.com> wrote:

> Hi,
> 
> I am trying to use the program VelvetOptimiser, which requires BioPerl. I
> just followed your instructions for installing in my directory on the UCLA
> computer cluster, but at the ./Build test I get this final output:
> 
> Files=337, Tests=0, 10 wallclock secs ( 1.74 usr  1.18 sys +  4.84 cusr
> 3.48 csys = 11.24 CPU)
> 
> Result: FAIL
> Failed 336/337 test programs. 0/0 subtests failed.
> 
> I'm thinking this may be related to the fact that when I first ran Build.PL
> I got some errors:
> 
> - ERROR: Test::Most is not installed
> - ERROR: IO::String is not installed
> - ERROR: Data::Stag is not installed
> 
> What can I do to fix this?
> 
> Thanks,
> Allison
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