[Bioperl-l] Bio-Samtools-1.39 and Samtools-0.2.0

Karsten karsten.sieber at gmail.com
Wed Mar 26 15:54:11 UTC 2014

I am having trouble compiling Bio-Samtools-1.39
with Samtools-0.2.0. I searched the archives and it
seems like updates were previously needed to fix 
this issue. Any advice how to get it to compile?

I receive the following error with compiling:
error building c_bin/bam2bedgraph.o from 'c_bin/bam2bedgraph.c'

I tried modifying the samtools makefile with -fPIC 
but that doesn't seem to help. 

Any suggestions?


More information about the Bioperl-l mailing list