[Bioperl-l] warning: Bio::Index::Fastq;

[Fields, Christopher J]

This may be a problem with the indexer (e.g. a bug).  However, I think this was fixed in recent releases of BioPerl, do you know what version you have?

chris

On Mar 10, 2014, at 10:15 AM, EpiMAN <eh_mcb at yahoo.com> wrote:

> Thanks Peter,
> I already checked and when I took those reads which have the same quality
> reads this problem occurs!! e.g. one case 
> 
> --------------------- WARNING ---------------------
> MSG: overwriting a current value stored for
> @@DDDDDFFFFFIIIDCBBBB##############################################################################
> 
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: overwriting a current value stored for
> @@DDDDDFFFFFIIIDCBBBB##############################################################################
> 
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: overwriting a current value stored for
> @@DDDDDFFFFFIIIDCBBBB##############################################################################
> 
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: overwriting a current value stored for
> @@DDDDDFFFFFIIIDCBBBB##############################################################################
> 
> ---------------------------------------------------
> 
> 
> 
> 
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