[Bioperl-l] dependencies in emboss.pm

[Yoshiro Nagao]

Hi Florent and Chris,

Thank to your advices, I installed bioperl-run. Thanks.

However, aligntutorila.pl requested ext package.
While installing ext package, I was blamed with the following message:



Yoshiro

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gcc -c  -I./libs -D_REENTRANT -D_GNU_SOURCE -DUSE_SITECUSTOMIZE -DPERL_RELOCATABLE_INCPUSH -fno-merge-constants -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2   -DVERSION=\"1.6.0\" -DXS_VERSION=\"1.6.0\" -fPIC "-I/home/nagapon3211/perl/lib/CORE"  -DPOSIX -DNOERROR Align.c
Running Mkbootstrap for Bio::Ext::Align ()
chmod 644 Align.bs
rm -f ../blib/arch/auto/Bio/Ext/Align/Align.so
gcc  -shared -O2 Align.o  -o ../blib/arch/auto/Bio/Ext/Align/Align.so libs/libsw.a	\
	     	\
	  
/usr/bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC
libs/libsw.a: could not read symbols: Bad value
collect2: ld exits with status 1