[Bioperl-l] length of hit->description

Antony03 antony.vincent.1 at ulaval.ca
Thu Jul 24 21:52:25 UTC 2014

In fact, I tried with fasta36 but I got this error:

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Unrecognized alignment line (3) '>--'
STACK: Error::throw
STACK: Bio::Root::Root::throw /sw/lib/perl5/5.16.2/Bio/Root/Root.pm:472
STACK: Bio::SearchIO::fasta::next_result
STACK: ./Auto_Annot.pl:83

The line 83 is this one of my previous code:

while( my $result = $searchio->next_result ) {

And I have no problem with fasta35. 

Thank you the the -L ... I had not thought it could be the problem

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