[Bioperl-l] length of hit->description

Torsten Seemann torsten.seemann at infotech.monash.edu.au
Thu Jul 24 20:10:20 UTC 2014

> my $fasta   = 'fasta35';

Firsly, I would recommend upgrading to fasta36 which was released in 2011 I
think. It's focussed on batch and command line usage rather than
interactive usage.

> my $command = "$fasta -b 1 $query $library";

By default fasta36 truncates the descriptions (and I think fasta35 did
too), so I think you need to add "-L" to the options ("long library

--Torsten Seemann
--Victorian Bioinformatics Consortium, Dept. Microbiology, Monash
University, AUSTRALIA
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