[Bioperl-l] length of hit->description

[Torsten Seemann]

>
> my $fasta   = 'fasta35';
>

Firsly, I would recommend upgrading to fasta36 which was released in 2011 I
think. It's focussed on batch and command line usage rather than
interactive usage.
http://faculty.virginia.edu/wrpearson/fasta/fasta36/


> my $command = "$fasta -b 1 $query $library";
>

By default fasta36 truncates the descriptions (and I think fasta35 did
too), so I think you need to add "-L" to the options ("long library
descriptions").

-- 
--Torsten Seemann
--Victorian Bioinformatics Consortium, Dept. Microbiology, Monash
University, AUSTRALIA
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