[Bioperl-l] MSG when using Bio::DB::Taxonomy

Cacau Centurion cacaucenturion2 at gmail.com
Fri Jul 11 03:21:30 UTC 2014

Hi all,

I was told the following message when trying to use Bioperl.

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Can't query website: 500 Can't connect to www.ncbi.nih.gov:80 (Bad
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl5/Bio/Root/Root.pm:368
STACK: Bio::DB::Taxonomy::entrez::get_taxonids

I use Bio::SearchIO and Bio::DB::Taxonomy in my script. It used to work
properly but has met the problem recently. Does anyone know why?

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