[Bioperl-l] Recent BP and GBrowse/JBrowse

Wed Apr 23 16:46:38 UTC 2014

That would be my bet.  

chris

On Apr 23, 2014, at 11:28 AM, Scott Cain <scott at scottcain.net> wrote:

> Hi all,
> 
> I've noticed that there seems to be a problem with recent BioPerl releases
> and GBrowse and JBrowse.  When the tests run for G/JBrowse, we get messages
> like this:
> 
> http://nopaste.info/61859e39db.html
> 
> I don't think the problem is coming from Bio::DB::SeqFeature::Store::memory
> since that hasn't changed in 3 years.  Could Bio::DB::IndexedBase be the
> problem?  I see this behavior in 1.6.923 and 1.6.922 but not in 1.6.901.
> 
> Thanks,
> Scott
> 
> 
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot
> net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
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