[Bioperl-l] Running a blast with bioperl and blosum 45

Pau Marc Muñoz Torres paumarc at gmail.com
Wed Apr 16 13:43:36 UTC 2014


Good afternoon

 I wrote a script to run a number of blast automatically. I found that is
possible to change the table used by

$Bio::Tools::Run::RemoteBlast::HEADER{'MATRIX_NAME'}=BLOSUMXX

I managed to do it, but I can't  use nor BLOSUM45 neither PAM250 tables.
What can I do to use those tables?

Thanks

Pau Marc Muñoz Torres
skype: pau_marc
http://www.linkedin.com/in/paumarc
http://www.researchgate.net/profile/Pau_Marc_Torres3/info/




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