[Bioperl-l] Perl script uses all my cpu

[Jason Stajich]

are you sure it is bioperl that is causing this - if you run top I am sure it is the fasta command that is causing this:

Also not sure why you initialize searchIO twice. Just initialize it in the loop where you use it.


Is the CPU just from running the application fasta36 ? you can specify the number of threads with -T  -- so to ask for 1 processor add "-T 1" to your fasta cmd

On Oct 29, 2013, at 2:05 PM, Antony03 <antony.vincent.1 at ulaval.ca> wrote:

> Hi,
> 
> I wrote this perl script http://pastebin.com/PWVKvcQ6 and it uses bioperl
> modules. It works well (I think) but it uses all my cpu (8)...i don't
> understand why.
> 
> Is someone know how execute my code on only one cpu?
> 
> Thanks!
> 
> Antony
> 
> 
> 
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Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org