[Bioperl-l] Where to get BLASTCLUST or equivalent?

[Hamish McWilliam]

BLASTCLUST is part of the legacy NCBI BLAST package (not NCBI BLAST+)
and can be obtained from:

ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST

As Robert notes there are many other tools which can be used to
perform sequence clustering, Wikipedia has a Sequence Clustering
article (http://en.wikipedia.org/wiki/Sequence_clustering) which lists
some of the most commonly used.

All the best,

Hamish

On 1 February 2013 04:15, Rob <yuf228 at hotmail.com> wrote:
> Cyril C.C. Chua <bmbcccc <at> bmb.leeds.ac.uk> writes:
>
>>
>> Hi,
>>
>> I have some difficulty in sourcing for BLASTCLUST or related
>> programs/mods. Does any1 know exactly how to locate them?
>>
>> Regards
>>
>> Cyril Chua
>>
>
>
> Hi Cyril,
>
> I heard of the following programmes that might do similar things (I HAVEN'T
> used any of them yet):
>
> Afree - http://www.vicbioinformatics.com/software.afree.shtml
> Uclust - http://drive5.com/uclust/uclust_userguide_2_1.pdf
> Usearch - http://www.drive5.com/usearch/
> DomClust - http://mbgd.genome.ad.jp/domclust/
>
> or
>
> Check this:
>
> http://ppod.princeton.edu/help/help_tech.html
>
> God bless,
>
>
> Robert
>
>
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