[Bioperl-l] Remote Blast against RefSeq_mrna db (Bio::Tools::Run::RemoteBlast)
Malachy Campbell
campbell.malachy at gmail.com
Thu Oct 18 01:47:20 UTC 2012
Hello all,
I would like to run a remote blast search against the RefSeq_mrna
database using the script below. Everything seems to work smoothly if I
use nt or other databases, however if I search against the RefSeq_mrna
db (typing refseq_rna when prompted) my output file cannot be opened. Is
there a specific designation for the RefSeq_mrna db in
Bio::Tools::Run::RemoteBlast? The link
http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/remote_blastdblist.html is
no longer available.
Any suggestions would be appreciated,
Mack
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