[Bioperl-l] get geneID for gene names
Hermann Norpois
hnorpois at googlemail.com
Wed May 2 17:42:05 UTC 2012
Hello,
I wish to get gene IDs for gene names (e.g. bdnf, copg). I thought it was a
good idea to use Bio::DB::EUtilities (see below) and addressed UNISTS as
database because there it was quite easy to find the gene ID. So far I was
unable to retrieve the gene ID from UNISTS. Could anybody give me a hint
how to proceed? The cookbook ... Yes, I was trying.
#!/bin/perl -w
use Bio::DB::EUtilities;
my $name = "Copg";
my $factory = Bio::DB::EUtilities->new(-eutil => 'efetch',
-db => 'unists',
-term => '$name AND mouse [ORGN]',
-email => 'hnorpois at mpipsykl.mpg.de'
)
Thank you
Hermann Norpois
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