[Bioperl-l] algorithm_version not working in multi-result blast output

[Paul Cantalupo]

Bug submitted: https://redmine.open-bio.org/issues/3298





On Wed, Sep 28, 2011 at 5:40 PM, Fields, Christopher J
<cjfields at illinois.edu> wrote:
> Not sure, but I would hazard a guess that only the 'Query=' line is present in concatenated BLAST reports past the initial report, and the version isn't carried over (I recall this being a problem with the algorithm() as well, but that was fixed a while ago.
>
> This should be an easy enough fix, but can you submit it as a bug so we can track it?
>
> chris
>
> On Sep 28, 2011, at 11:54 AM, Paul Cantalupo wrote:
>
>> Hello,
>>
>> I'm using the most recent copy of bioperl-live (pulled yesterday). I
>> have a BLASTN (from blast+) output file for 3 query sequences
>> (https://gist.github.com/1248342). I used this script,
>> https://gist.github.com/1248338, to print the query id, algorithm and
>> algorithm_version for each result. When I run the script, I get the
>> following output:
>>
>> GFAVMM201BADC0  BLASTN  2.2.25+
>> GFAVMM201A1JOH  BLASTN
>> GFAVMM201D933Z  BLASTN
>>
>> Algorithm_version outputs the correct version for the first result but
>> outputs the empty string for the 2nd and 3rd query. Why? This
>> functionality worked about a month ago. What has changed to cause this
>> to happen?
>>
>> Thank you,
>>
>> Paul
>>
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>
>