[Bioperl-l] Fwd: cds sequence extract

Brian Osborne briano at bioteam.net
Mon Sep 12 13:20:36 UTC 2011


Liang Ma,

I'm forwarding this to the Bioperl mailing list.

If you're starting out with Bioperl I suggest you read this:

http://www.bioperl.org/wiki/HOWTO:Beginners

Brian O.


Begin forwarded message:

> From: maliang7121 <maliang7121 at 163.com>
> Date: September 12, 2011 2:20:20 AM EDT
> To: briano at bioteam.net
> Subject: cds sequence extract
> 
> Dear Brian:
> 
> I am a student of Chinese Academy of Sience, I begin to love bioperl, but now I have a problem.
> 
> According to the script of the attachment, I could easily dowload sequences from NCBI, now I need extract cds sequence from the genbank format files, and put them all in a single file using fasta format, I can not do it, could you spend a few minite wrinting a script for me?
> 
> Best!
> 
> Liang Ma
> 
> 
> 

Brian O.
--
Brian Osborne, PhD
BioTeam: http://bioteam.net
email: briano at bioteam.net
mobile: 978-317-3101

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20110912/8386d3bb/attachment-0012.html>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: acc.txt
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20110912/8386d3bb/attachment-0004.txt>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20110912/8386d3bb/attachment-0013.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: get_seq_by_acc_ml.pl
Type: text/x-perl-script
Size: 583 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20110912/8386d3bb/attachment-0004.bin>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20110912/8386d3bb/attachment-0014.html>


More information about the Bioperl-l mailing list