[Bioperl-l] Fwd: blast result not matching.

[Peter Cock]

On Mon, Sep 5, 2011 at 8:53 AM, Manju Rawat <manju.rawat2 at gmail.com> wrote:
> Hi,
> I doing blast using bioperl...but it not showing me complete result..
>
>
> my program is following...
> ...
>
> this result is not matching with with NCBI result...
> Is there anything wrong..

The NCBI website for BLAST uses different default values
to the BLAST command line tools. Check things like the
gap parameters if you want to use the same settings.

Peter