[Bioperl-l] remove gap columns in alignment

[Roy Chaudhuri]

http://search.cpan.org/~cjfields/BioPerl-1.6.901/Bio/SimpleAlign.pm#splice_by_seq_pos

On 24/05/2011 14:04, cdonati wrote:
> Dear All,
>
> does anybody know how to remove those column in an alignment that have
> a gap in one sequence that I specify? I know that you can remove
> columns that have a gap in any sequence or gap only columns, but I
> don't know how to remove gaps in a reference sequence.
>
> Thanks a lot,
>
> Claudio Donati
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