[Bioperl-l] failed to install Bio::Tools::Run::StandAloneBlastPlus

[Galeb Abu-Ali]

Hi,

I'm having trouble installing Bio::Tools::Run::StandAloneBlastPlus, which
I'd like to try since I use standalone BLAST+.
I realize the obstacle has to do with CJFIELDS/BioPerl-Run-1.006900, but
have no idea how to fix it. Below is the Test Summary Report and cpan-tester
results for CJFIELDS/BioPerl-Run-1.006900.tar.gz. I use a RHEL 5.5 machine.
Many thanks for your suggestions.

galeb



Test Summary Report
-------------------
t/BWA.t                     (Wstat: 512 Tests: 0 Failed: 0)
  Non-zero exit status: 2
  Parse errors: Bad plan.  You planned 36 tests but ran 0.
t/Blat.t                    (Wstat: 65280 Tests: 20 Failed: 0)
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 33 tests but ran 20.
t/Samtools.t                (Wstat: 512 Tests: 24 Failed: 0)
  Non-zero exit status: 2
  Parse errors: Bad plan.  You planned 40 tests but ran 24.
Files=80, Tests=2799, 34 wallclock secs ( 0.37 usr  0.06 sys + 30.90 cusr
3.07 csys = 34.40 CPU)
Result: FAIL
Failed 3/80 test programs. 0/2799 subtests failed.
  CJFIELDS/BioPerl-Run-1.006900.tar.gz
  ./Build test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
  reports CJFIELDS/BioPerl-Run-1.006900.tar.gz
Running Build install
  make test had returned bad status, won't install without force
Failed during this command:
 CJFIELDS/BioPerl-Run-1.006900.tar.gz         : make_test NO

cpan[2]> reports CJFIELDS/BioPerl-Run-1.006900.tar.gz
Distribution: C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
Fetching 'http://www.cpantesters.org/show/BioPerl-Run.yaml'...DONE

Catching error: "CPAN::Exception::yaml_process_error=HASH(0x1964d450)" at
/usr/local/lib/perl5/5.12.2/CPAN.pm line 391
        CPAN::shell() called at /usr/local/lib/perl5/5.12.2/App/Cpan.pm line
295
        App::Cpan::_process_options('App::Cpan') called at
/usr/local/lib/perl5/5.12.2/App/Cpan.pm line 364
        App::Cpan::run('App::Cpan') called at /usr/local/bin/cpan line 11