[Bioperl-l] Blastp filters - no hits on similar sequence

[rgoldade]

I'm having a problem with blastp filters... I'm using blast to compare
artificial sequences:

Calling 
>blastp -query test1.fa -subject test2.fa 

Returns no hits. From what I've read, there are no filters active by default
with blastp but I'm still having nothing returned. Does anyone have a
suggestion how to overcome this issue?

Thank you,
Ryan

Example

>Line1
HHHHHAAAAAAAAAAAAAAIHHHHHAAAAAAAAAAAAAAIHHHHHAAAAAAAAAAAAAAI

>Line2
HHHHHAAAAAAAAAAAAAAIHHHHHAAALAAAALALAAAIHHHHHAAAAAAAAAAAAAAI



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