[Bioperl-l] parsing interproscan result

[Dave Messina]

Hi Shachi,

There is a SeqIO module for parsing InterProScan XML which I think will do
what you want. Bio::SeqIO::interpro

The basic structure of your code will follow the SeqIO idiom (see the SeqIO
HOWTO), and the test file t/SeqIO/interpro.t has some bits of example code
that might be helpful for the interpro-specific stuff.

Dave




On Thu, May 12, 2011 at 08:22, Shachi Gahoi <shachigahoimbi at gmail.com>wrote:

> I want to parse interproscan result and through parsing of interproscan
> result I want PROSITE signature as an output.
>
> Like, I entered a particular sequence in Interproscan and now i want to
> parse a domain signature it contains.
>
> So how can i parse a particular domain signature from interproscan output.
>
> Is there any module in bioperl to parse a domain signature from
> interproscan
> output.
>
> Please tell me if anyone knows.
>
>
>
> Thanks in advance
>
> --
> Regards,
> Shachi
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