[Bioperl-l] Perl

[Luis-Miguel Rodríguez Rojas]

Hello Akash,

That can be done with a very short script in bioperl (probably a
one-liner?).  Take a look at
Bio::SeqIO<http://search.cpan.org/~cjfields/BioPerl-1.6.901/Bio/SeqIO.pm>and
Bio::Seq <http://search.cpan.org/~cjfields/BioPerl-1.6.901/Bio/Seq.pm>
 documentation.

Regards,
LRR

--
Luis M. Rodriguez-R
[ http://thebio.me/lrr | lrr at cpan.org ]
---------------------------------
UMR Résistance des Plantes aux Bioagresseurs - Group effecteur/cible
Institut de Recherche pour le Développement, Montpellier, France
[ http://bioinfo-prod.mpl.ird.fr/xantho | Luismiguel.Rodriguez at ird.fr ]
+33 (0) 6.29.74.55.93

Unidad de Bioinformática del Laboratorio de Micología y Fitopatología
Universidad de Los Andes, Bogotá, Colombia
[ http://lamfu.uniandes.edu.co | luisrodr at uniandes.edu.co ]
+57 (1) 3.39.49.49 ext 2777



On Thu, Jul 21, 2011 at 1:50 PM, Akash <akki.coool2 at gmail.com> wrote:

> HI
>
> I am a student of University of Exeter and doing my master's in
> Bioinformatics. I am working on perl and here I need to input the "fasta"
> file in perl and then I have to remove the contigs which have more than
> "200" base pairs.
>
> So can you help me how to do this?
>
> Looking for your positive reply
>
> With Regards
> Akash
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