[Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4

Vicky Hollenbeck hollenbv at onid.orst.edu
Wed Jul 20 16:25:59 UTC 2011


Hi Chris,

I haven't tried Strawberry Perl.  I thought about it, but I didn't find 
any instructions on installing BioPerl with Strawberry Perl and frankly 
I need the walkthrough.  Perhaps you know of a site with instructions 
for this?

Vicky

Chris Fields wrote:
> The problem, truthfully, is that the number of our Windows users is much higher than our Windows developers.  Just a quick question: have you tried Strawberry Perl?  It's supposed to be much more UNIX-like in it's behavior than ActivePerl.
>
> chris
>
> On Jul 19, 2011, at 5:56 PM, Vicky Hollenbeck wrote:
>
>   
>> Hi Scott,
>>
>> Thank you.  I added the trouchelle.com/ppm10/ as well as trouchelle.com/ppm12/ repositories.  When I say install ppm DB_file I get a reply that no packages are missing.  Then I installed BioPerl over.  I still get the error messages below.  When doing a ppm list, the DB_file shows in the list, but nothing under the 'files' column.  Still it looks like BioPerl installed.  I am interested in running scripts with Bio:SearchIO and I don't see any lines for use DB_file, so maybe it is a mute point for my purposes.  Just a note that I'm running ActivePerl 5.12.4 as it is the 'Community' version on their website.
>>
>> Vicky
>>
>> Scott Cain wrote:
>>     
>>> Hi Vicky,
>>>
>>> Annoyingly, ActiveState doesn't include DB_file with their build of
>>> Perl anymore, even though it is a core perl module.  I believe you can
>>> get it for perl 5.10 via a different repo.  Try this on the command
>>> line:
>>>
>>>  ppm rep add trouchelle.com http://trouchelle.com/ppm10/
>>>
>>> and then install DB_file with ppm.  Please let us know if that works
>>> so we can update the wiki.
>>>
>>> Good luck,
>>> Scott
>>>
>>>
>>> On Mon, Jul 18, 2011 at 7:48 PM, Vicky Hollenbeck
>>> <hollenbv at onid.orst.edu> wrote:
>>>  
>>>       
>>>> Hello,
>>>>
>>>> I am getting two error messages after following the instructions for
>>>> installing BioPerl from command line according to
>>>> http://www.bioperl.org/wiki/Installing_Bioperl_on_Windows.  I have all the
>>>> repositories listed in the table under 'Perl 5.10':
>>>>
>>>> *Can't find any package that provides Convert::Binary::C for Bundle-BioPerl
>>>> Core
>>>> *Can't find any package that provides DB_file:: for Bundle-BioPerl Core
>>>>
>>>> I originally was doing installation via the GUI, but when I got a few error
>>>> messages, went on to the command line version.  I was able to fix the SOAP
>>>> error message by following the instuctions there, but can't seem to fix the
>>>> other two listed above.
>>>>
>>>> Thank you in advance.
>>>>
>>>> Vicky Hollenbeck
>>>> USDA Agricultural Research Service
>>>> Corvallis, OR
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>>
>>>>    
>>>>         
>>>
>>>  
>>>       
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>
>
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