[Bioperl-l] questions on analysising clustalw alignment result files

[Peter Cock]

On Tue, Jul 5, 2011 at 11:50 AM, Tao Zhu <tzhu at mail.bnu.edu.cn> wrote:
> I've created an alignment file using clustalw 2.0.12. This file "test.aln"
> is attached in the mail.
>
> I want to analysis it using Bio::AlignIO, ...

The Biopython clustal parser doesn't like it either - I think the extra sequence
numbers are the problem, I don't recall seeing those with clustalw 2.0.10.

I just checked and there is already a clustalw 2.1 release, and a new
release Clustalw Omega 1.0.2 (which curiously isn't called clustalw v3).

Peter