[Bioperl-l] Installing Bioperl using CPAN on Suse 11.3
tim
timmcilveen at talktalk.net
Mon Sep 13 23:07:00 UTC 2010
Hi,
I have just installed Bioperl on my Linux system using the CPAN install. The
install summary is as follows:
Test Summary Report
-------------------
t/RemoteDB/GenPept.t (Wstat: 256 Tests: 21 Failed: 1)
Failed test: 17
Non-zero exit status: 1
t/RemoteDB/Query/GenBank.t (Wstat: 256 Tests: 18 Failed: 1)
Failed test: 9
Non-zero exit status: 1
Parse errors: Bad plan. You planned 21 tests but ran 18.
t/RemoteDB/Taxonomy.t (Wstat: 512 Tests: 103 Failed: 2)
Failed tests: 15, 98
Non-zero exit status: 2
t/Root/RootIO.t (Wstat: 7424 Tests: 30 Failed: 0)
Non-zero exit status: 29
Parse errors: Bad plan. You planned 31 tests but ran 30.
Files=329, Tests=18407, 512 wallclock secs ( 6.19 usr 0.91 sys + 156.68 cusr
9.16 csys = 172.94 CPU)
Result: FAIL
Failed 4/329 test programs. 4/18407 subtests failed.
CJFIELDS/BioPerl-1.6.1.tar.gz
./Build test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports CJFIELDS/BioPerl-1.6.1.tar.gz
Running Build install
make test had returned bad status, won't install without force
Failed during this command:
CJFIELDS/BioPerl-1.6.1.tar.gz : make_test NO
Is Bioperl properly installed? During the install process I was getting quite
a lot of this error (100's of instances):
'replacement list longer than search list . This happened with t/tools, t/seq
/ t/search and many others.
Any advice would be great.
Tim
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