[Bioperl-l] Full bioperl-live github demo

[Chris Fields]

Added you in.  SSH access should work with any ssh keys you have set in github.  

We can play around with this for the time being (try post commit hooks, etc), but obviously can't make any serious commits to it until we are ready for complete migration; everything will still need to go to dev svn until then.  Also noticed that we are topping the account out at the moment, but removing the old read-only repos should help.  May need to think about that in the long-term.

chris


On May 3, 2010, at 8:13 AM, Mark A. Jensen wrote:

> That's it-- the github site sez http, but that must be for a simple copy (however you do that...) I'm on github with
> majensen
> cheers Chris- MAJ
> ----- Original Message ----- From: "Chris Fields" <cjfields at illinois.edu>
> To: "Mark A. Jensen" <maj at fortinbras.us>
> Cc: "BioPerl List" <bioperl-l at lists.open-bio.org>
> Sent: Monday, May 03, 2010 9:07 AM
> Subject: Re: [Bioperl-l] Full bioperl-live github demo
> 
> 
> This worked for me (note the URL is git, not http; on Mac OS X 10.6, git 1.6.4.1):
> 
> cjfields$ git clone git://github.com/bioperl/bioperl-test.git
> Initialized empty Git repository in /Users/cjfields/gittest/bioperl-test/.git/
> remote: Counting objects: 86737, done.
> remote: Compressing objects: 100% (22309/22309), done.
> remote: Total 86737 (delta 64759), reused 85957 (delta 63979)
> Receiving objects: 100% (86737/86737), 143.24 MiB | 1536 KiB/s, done.
> Resolving deltas: 100% (64759/64759), done.
> 
> For dev access (ssh or https) we need to set up collaborators within the github bioperl account.  I'll add a few.  Do you have a github acct set up?
> 
> chris
> 
> On May 3, 2010, at 7:25 AM, Mark A. Jensen wrote:
> 
>> Hi Chris,
>> I attempted a clone and got the following. Is this my problem?
>> thanks MAJ
>> 
>> $ git clone http://github.com/bioperl/bioperl-test.git
>> 
>> Initialized empty Git repository in /...../bioperl/github/bioperl-test/.git/
>> Getting alternates list for http://github.com/bioperl/bioperl-test.git
>> Getting pack list for http://github.com/bioperl/bioperl-test.git
>> Getting index for pack 809561bb87edbf2bef183164ceb96cd6099ee06c
>> Getting index for pack 9530b04c1b4f494c2c9163775fdc00eab975caa6
>> Getting pack 809561bb87edbf2bef183164ceb96cd6099ee06c
>> which contains 5ac325fa636b50ca1163d79feceb00eff1fa738f
>> error: file /...../github/bioperl-test/.git/objects/pack/pack-809561bb87edbf2bef183164ceb96cd6099ee06c.pack is not a GIT packfile
>> fatal: packfile /...../github/bioperl-test/.git/objects/pack/pack809561bb87edbf2bef183164ceb96cd6099ee06c.pack cannot be accessed
>> 
>> 
>> ----- Original Message ----- From: "Chris Fields" <cjfields at illinois.edu>
>> To: "BioPerl List" <bioperl-l at lists.open-bio.org>
>> Sent: Monday, May 03, 2010 12:22 AM
>> Subject: [Bioperl-l] Full bioperl-live github demo
>> 
>> 
>>> All,
>>> 
>>> I have pushed a demo of the bioperl-live (all branches and tags) to github here:
>>> 
>>> http://github.com/bioperl/bioperl-test
>>> 
>>> This is separate from the 'bioperl-live' repo at the same github account for the time being.  The conversion was performed using svn2git (the gitorious C++/Qt version from the KDE project migration, Jonathan Leto's suggestion), using the rsync'ed svn repo via ssh from dev.open-bio.org, so an update and rerun can be performed very quickly.  The actual conversion of the entire bioperl repo took very little time, actually (less than 3 minutes).  I think, with some additional small work using the svn2git rules pretty much everything is ready for migration.
>>> 
>>> In this run, all subversion tags are converted to git tags (branches remain git branches as expected).  Just in case I'm missing something, I would like everyone to take a look at this, though.  In particular, I would like to make sure tags and branches are as they are expected.  So far I haven't seen anything that stands out as odd.
>>> 
>>> chris
>>> 
>>> 
>>> 
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>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>> 
>> 
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> 
> 
>