[Bioperl-l] Res: Res: How to do a megablast with Bioperl?

[Rondon Neto]

Thank you!
Rondon




________________________________
De: Dave Messina <David.Messina at sbc.su.se>
Para: Rondon Neto <rondonbio at yahoo.com.br>
Cc: BioPerl List <bioperl-l at lists.open-bio.org>
Enviadas: Segunda-feira, 7 de Junho de 2010 14:58:12
Assunto: Re: Res: [Bioperl-l] How to do a megablast with Bioperl?

Hi Rondon,

Please keep the list on the Cc so everyone can follow along.



Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl?
>

Sorry, I read your last post too fast.

You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus:

http://www.bioperl.org/wiki/HOWTO:StandAloneBlast

http://bioperl.org/wiki/HOWTO:BlastPlus


Note that in blastplus, megablast is the default -task


Dave


PS — I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated?