[Bioperl-l] Inherent graph on classes in Bio::Search?

Peng Yu pengyu.ut at gmail.com
Sun Jun 6 22:29:39 UTC 2010

There are many classes defined in Bio::Search, which is confusing to
new users. Is there an inherentance graph and a dependency graph to
help new users understand how they work?


For example, Bio::Search::HSP::GenericHSP is an implementation of
Bio::Search::HSP::HSPI (if I'm correct), which is documented in the
text. But I feel it would be much easier to see this relationship, if
this is drawn graphically.


More information about the Bioperl-l mailing list