[Bioperl-l] bioperl support for running blast locally

[Florent Angly]

To run BLAST locally, see  bioperl-run  / lib  / Bio  / Tools  / Run  / 
BlastPlus.pm
Then to parse the results, you can read this: 
http://www.bioperl.org/wiki/HOWTO:SearchIO
Florent

On 06/06/2010 07:28 AM, Peng Yu wrote:
> There is a module to run blast remotely
> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and
> I think that it makes more sense for me to run blast locally. Is there
> a way to let bioperl parse the output from my local command line
> blast?
>
>