[Bioperl-l] BlastPlusMethods

[Mark A. Jensen]

Hey Dimitar,
Beauty is in the eye of the beholder. Looks beautiful (since it works) to me. 
Can you do a git pull request on this? The guys who understand those things can 
then pull it in-- 
Thanks Mark
----- Original Message ----- 
From: "Dimitar Kenanov" <dimitark at bii.a-star.edu.sg>
To: <bioperl-l at bioperl.org>
Sent: Wednesday, June 02, 2010 11:15 PM
Subject: [Bioperl-l] BlastPlusMethods


> Hi guys,
> i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize 
> the psiblast(and most probably rps and rpst) result and therefore doesnt parse 
> it. The problem was in the 'run' method where the match doesnt match properly:
> ------
> m/^[t]?blast[npx]/ && do {
> -------
>
> So i modified it pretty ugly into the following but now it works for me:
> ------
> m/^(t|psi|rps|rpst)?blast[npx]?/ && do {
> ------
> I dont know if it may be more beautiful but i suppose it could :)
>
> Cheers
> Dimitar
>
> -- 
> Dimitar Kenanov
> Postdoctoral research fellow
> Protein Sequence Analysis Group
> Bioinformatics Institute
> A*STAR, Singapore
> tel: +65 6478 8514
>
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