[Bioperl-l] Bioperl on GitHub

Chris Fields cjfields at illinois.edu
Thu Apr 15 02:48:12 UTC 2010


I'll work on a full test migration this weekend.

chris

On Apr 14, 2010, at 1:16 AM, Jason Stajich wrote:

> I think we should migrate as well. The primary can also be at github if you like - the lack of code.open-bio system is a real problem that doesn't seem to be getting fixed....
> We could also make the primary github if need be?
> 
> -jason
> 
> Chris Fields wrote, On 4/13/10 8:10 AM:
>> On Apr 13, 2010, at 9:30 AM, Peter wrote:
>> 
>>   
>>> On Mon, Feb 22, 2010 at 10:09 PM, Chris Fields<cjfields at illinois.edu>  wrote:
>>>     
>>>> All,
>>>> 
>>>> As a backup for the anonymous svn access on code.open-bio.org, I have
>>>> set up a few READ-ONLY mirrors on GitHub for the main trunk code of
>>>> several BioPerl distributions, generated using git-svn:
>>>> 
>>>> http://github.com/bioperl
>>>> 
>>>> These are sync'ed every 15 minutes.
>>>> 
>>>> Note the emphasis on 'read-only'; we don't anticipate migrating code
>>>> over to github completely, at least at the moment.  Based on that and
>>>> several issues with git/svn two-way syncing (outlined in the git-svn man
>>>> pages and elsewhere), we will not support pull requests directly in
>>>> github.
>>>> 
>>>> enjoy!
>>>> 
>>>> chris
>>>>       
>>> Hi all,
>>> 
>>> At the start of April GitHub announced support for accessing a
>>> github.com hosted git repository via SVN (and this is apparently
>>> not an April Fools joke):
>>> 
>>> http://github.com/blog/626-announcing-svn-support
>>> 
>>> This means in addition to using the github read only mirror via git, e.g.
>>> 
>>> git clone git://github.com/bioperl/bioperl-live.git
>>> 
>>> You can also use the github read only mirror via svn, e.g.
>>> 
>>> svn checkout http://svn.github.com/bioperl/bioperl-live.git
>>> 
>>> I've just used this to grab the latest code - it seems to work fine.
>>> This should be handy if code.open-bio.org (the OBF anonymous
>>> CVS and SVN server) is down.
>>> 
>>> Regards,
>>> 
>>> Peter
>>>     
>> 
>> Yes, saw that.  I'm thinking more and more we should start migrating our work to github...
>> 
>> chris
>> 
>> 
>> 
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>   
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l





More information about the Bioperl-l mailing list