[Bioperl-l] Support for KEGG

[Brian Osborne]

Arthur,

The only support for network retrieval or analysis in Bioperl is found in bioperl-network:

http://www.bioperl.org/wiki/Network_package

I'm not sure if this is what you are looking for, or not. There is no support for KEGG data in bioperl-network.

Brian O.


On Apr 7, 2010, at 12:14 PM, ARTHUR GOLDBERG wrote:

> Hi
> 
> Does Bioperl support Kegg non-sequence data such as pathways? (Bio::SeqIO::kegg supports KEGG sequence data.)
> For example, Kegg's web services interface provides loads of access to Kegg pathway, gene and enzyme info. However, even it doesn't support things like the pathway hierarchy distributed in files in ftp://ftp.genome.jp/pub/kegg/brite/organisms/.
> 
> BR
> A
> 
> 
> 
> Arthur P. Goldberg, PhD
> 
> Research Scientist in Bioinformatics
> Plant Systems Biology Laboratory
> www.virtualplant.org
> 
> Visiting Academic
> Computer Science Department
> Courant Institute of Mathematical Sciences
> www.cs.nyu.edu/artg
> 
> artg at cs.nyu.edu
> New York University
> 212 995-4918
> Coruzzi Lab
> 8th Floor Silver Building
> 1009 Silver Center
> 100 Washington Sq East
> New York NY 10003-6688
> 
> 
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l