[Bioperl-l] Support for KEGG
ARTHUR GOLDBERG
artg at cs.nyu.edu
Wed Apr 7 16:14:55 UTC 2010
Hi
Does Bioperl support Kegg non-sequence data such as pathways?
(Bio::SeqIO::kegg supports KEGG sequence data.)
For example, Kegg's web services interface provides loads of access to
Kegg pathway, gene and enzyme info. However, even it doesn't support
things like the pathway hierarchy distributed in files in ftp://ftp.genome.jp/pub/kegg/brite/organisms/
.
BR
A
Arthur P. Goldberg, PhD
Research Scientist in Bioinformatics
Plant Systems Biology Laboratory
www.virtualplant.org
Visiting Academic
Computer Science Department
Courant Institute of Mathematical Sciences
www.cs.nyu.edu/artg
artg at cs.nyu.edu
New York University
212 995-4918
Coruzzi Lab
8th Floor Silver Building
1009 Silver Center
100 Washington Sq East
New York NY 10003-6688
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