[Bioperl-l] Random nucleotide string generator?

Aidan Budd budd at embl-heidelberg.de
Fri Jun 26 08:30:12 UTC 2009


a non-bioperl option would be to use something external like seq-gen or 
similar - tools designed for outputing "random" sequences simulated over a 
tree - one could simply sample a single simulated sequence at random from 
the output alignment

On Fri, 26 Jun 2009, Roger Hall wrote:

> All,
>  Is there a random generator for creating nucleotides (of length l with
> composition frequencies a, c, g, and t) in there somewhere?
>  
> I noticed a thread about it from 2000 and nothing since (searching for "random sequence").
>  
> If not - what should the namespace be for such a module should it be undone and desirable? 
>  
> TIA!
>  
> Roger 
>  
>  
>  
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> 

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Aidan Budd                                    tel:+49 (0)6221 387 8530
EMBL - European Molecular Biology Laboratory  fax:+49 (0)6221 387 8517
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