[Bioperl-l] About to tag the last RC...

Chris Fields cjfields at illinois.edu
Tue Jan 20 23:27:48 UTC 2009

On Jan 20, 2009, at 5:04 PM, Kristine Briedis wrote:

> Hi Chris,
> My name is Kristine Briedis and I recently joined Scott's group at  
> Accelrys.  I just wanted to quickly follow-up on Scott's email.  We  
> traced the minor differences in BLAST scores back to revision 11578  
> of Bio::SearchIO::blast.pm (bugzilla #1986).  We will update our  
> regression baselines to correspond with this bugfix.
> We also discovered that the tag type differences in the XML  
> representation of our Pipeline Pilot records were related to two  
> different revisions.  We saw a change from "doublevalue" to  
> "stringvalue" for the e-value after the aforementioned blast.pm  
> revision 11578, and a change from "integervalue" to "doublevalue"  
> for hsp hit gaps and hsp query gaps after revision 15014 of  
> Bio::Search::HSP::GenericHSP.  Again, we don't think this is a  
> problem-we'll just update our baselines.

Okay, works for me.

> Thanks again for the quick response and bugfixes.  Your work is very  
> much appreciated!
> Cheers,
> Kristine

No problem.  Let us know if anything else pops up!


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