[Bioperl-l] assembling chromosomes from contigs and .agp file

Smithies, Russell Russell.Smithies at agresearch.co.nz
Thu Jan 8 00:33:26 UTC 2009

Does anyone have a script for building chromosomes from an .agp file and a directory full of contigs?
If not, I'll write something but I didn't want to re-invent the wheel if there's something "in the wild".

Would something like a Bio::Assembly::IO::agp.pm be a good idea? Could an .agp file be regarded as a Bio::Assembly?


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