[Bioperl-l] Indexing CDS file
David.Messina at sbc.su.se
Wed Feb 11 23:24:21 UTC 2009
I just committed support for these weirdo CDS records, along with some
One unexpected issue cropped up:
I had to make a change in _read_EMBL_Species to have it pushback() a line
after slurping all of the 'OS' and 'OC' lines, since the slurping loop was
improperly consuming the next line after the final 'OC' line.
I don't think anybody noticed before because vanilla EMBL records have a
spacer 'XX' line as the next line, whereas the CDS records have the 'OX'
Tests pass, but please let me know if you see any issues.
More information about the Bioperl-l