[Bioperl-l] supporting hmmer3 in bioperl-run and bioperl-live

Dave Messina David.Messina at sbc.su.se
Wed Feb 11 13:48:52 UTC 2009

HMMER3 is still in early alpha IIRC, but I did get an Infernal parser
> working pre-1.0 release so...

I am somewhat interested in doing this, but I'm a little reluctant to do so
yet because formats and options are a moving target.

HMMer's author Sean Eddy wrote on his blog:

> The core of H3's functionality seems stable to me, but all the stuff that
> *you * see — the applications, the command line options, the i/o formats —
> is deliberately still protoypical and fluid.

So personally I'm inclined to wait, but don't let that stop anyone else from
jumping ahead.


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