[Bioperl-l] Is Bio::KEGG:Enzyme implemented?
cjfields at illinois.edu
Wed Feb 25 15:05:21 UTC 2009
On Feb 25, 2009, at 8:13 AM, Bryan Bishop wrote:
> Hey all,
> I began writing a program to extract a reaction pathway from
> KEGG/reactome and "transplant" it into another genome, along with all
> of the required genetic 'dependencies' (in the sense of deb/rpm,
> apt/yum dependencies). To do this, I started writing a program that
> would parse KEGG's database format-- here's a reference discussion:
> Anyway, at first I thought bioperl hadn't implemented KEGG::Enzyme,
> but now I've noticed that biopython does:
> actual implementation:
> Have I missed the bioperl implementation of this portion?
> Thank you :-).
> - Bryan
> 1 512 203 0507
No, that's for KEGG sequence records. We would gladly welcome
anything towards integrating KEGG file parsing within bioperl; I'm
interested in it myself (working with microarray data).
More information about the Bioperl-l