[Bioperl-l] SeqIO-based parser for Vector NTI sequence files
Scott Markel
smarkel at accelrys.com
Tue Oct 21 20:49:21 UTC 2008
I'm looking for a BioPerl-related solution to parsing Vector NTI
sequence files. The genbank.pm parser will work, but it doesn't
parse the COMMENT lines beyond grabbing the simple string value,
so it misses all of the added information in those lines.
If you know of any existing code, I'd be interesting in hearing
about it. I checked BioPerl, BioJava, and EMBOSS documentation.
I also checked the Invitrogen web site.
Scott
--
Scott Markel, Ph.D.
Principal Bioinformatics Architect email: smarkel at accelrys.com
Accelrys (SciTegic R&D) mobile: +1 858 205 3653
10188 Telesis Court, Suite 100 voice: +1 858 799 5603
San Diego, CA 92121 fax: +1 858 799 5222
USA web: http://www.accelrys.com
http://www.linkedin.com/in/smarkel
Board of Directors: International Society for Computational Biology
Co-chair: ISCB Publications Committee
Associate Editor: PLoS Computational Biology
Editorial Board: Briefings in Bioinformatics
More information about the Bioperl-l
mailing list