[Bioperl-l] How to input fasta and qual into Bio::Seq::Quality?

[Chris Fields]

On Jul 24, 2008, at 5:00 PM, Phillip San Miguel wrote:

> Mark Johnson wrote:
>> I suppose another option would be to convert your seq/qual files to
>> fastq format (See Bio::SeqIO::fastq).
>>
>>
> Or, with prompting from another thread, I now see that  
> Bio::SeqIO::phd creates Bio::Seq::Quality objects.
>
> Thanks,
> Phillip

There are a few SeqIO modules which create Bio::Seq::Quality (phd,  
scf, ctf, etc).  It all depends on which format you want/specify.

chris