[Bioperl-l] Install help errors
snoze pa
snoze.pa at gmail.com
Wed Jul 9 20:32:51 UTC 2008
Hilmar,
Here are results of fresh bioperl installation from cvs. Seems it is
not even installing the bioperl properly.
>perl -MCPAN -e shell
cpan>install Bundle::CPAN
cpan>q
>cpan
cpan>install Module::Build
cpan>o conf prefer_installer MB
cpan>o conf commit
cpan>q
>cpan
cpan[1]> d /bioperl/
CPAN: Storable loaded ok (v2.18)
Going to read /root/.cpan/Metadata
Database was generated on Wed, 09 Jul 2008 19:02:50 GMT
CPAN: YAML loaded ok (v0.66)
Going to read /root/.cpan/build/
............................................................................DONE
Found 16 old builds, restored the state of 10
Distribution BIRNEY/bioperl-1.2.1.tar.gz
Distribution BIRNEY/bioperl-1.2.2.tar.gz
Distribution BIRNEY/bioperl-1.2.3.tar.gz
Distribution BIRNEY/bioperl-1.2.tar.gz
Distribution BIRNEY/bioperl-1.4.tar.gz
Distribution BIRNEY/bioperl-db-0.1.tar.gz
Distribution BIRNEY/bioperl-ext-1.4.tar.gz
Distribution BIRNEY/bioperl-gui-0.7.tar.gz
Distribution BIRNEY/bioperl-run-1.2.2.tar.gz
Distribution BIRNEY/bioperl-run-1.4.tar.gz
Distribution BOZO/Fry-Lib-BioPerl-0.15.tar.gz
Distribution CRAFFI/Bundle-BioPerl-2.1.8.tar.gz
Distribution SENDU/bioperl-1.5.2_102.tar.gz
Distribution SENDU/bioperl-db-1.5.2_100.tar.gz
14 items found
cpan[2]> install S/SE/SENDU/bioperl-1.5.2_102.tar.gz
Running Build for S/SE/SENDU/bioperl-1.5.2_102.tar.gz
Has already been unwrapped into directory
/root/.cpan/build/bioperl-1.5.2_102-Dx59Dg
Has already been made
Running Build test
Test Summary Report
-------------------
t/Biblio_eutils (Wstat: 0 Tests: 6 Failed: 1)
Failed test: 6
Parse errors: Bad plan. You planned 5 tests but ran 6.
t/BioFetch_DB (Wstat: 0 Tests: 27 Failed: 1)
Failed test: 27
t/HtSNP (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 0.
Files=236, Tests=12000, 366 wallclock secs ( 7.79 usr 1.28 sys +
174.92 cusr 10.07 csys = 194.06 CPU)
Result: FAIL
Failed 3/236 test programs. 2/12000 subtests failed.
SENDU/bioperl-1.5.2_102.tar.gz
./Build test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports SENDU/bioperl-1.5.2_102.tar.gz
Running Build install
Already done
Failed during this command:
SENDU/bioperl-1.5.2_102.tar.gz : make_test NO
Any Idea
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