[Bioperl-l] Getting Genomic Position of Genes using BioPerl

[Brian Osborne]

Gundala,

There's an introduction to some of these approaches, including the  
ENSEMBL API, at:

http://www.bioperl.org/wiki/HOWTO:Getting_Genomic_Sequences


Brian O.


On Dec 5, 2008, at 7:47 AM, Sean Davis wrote:

> On Fri, Dec 5, 2008 at 5:55 AM, Gundala Viswanath  
> <gundalav at gmail.com> wrote:
>> Dear All,
>>
>> Is there a way we can get the genomic position
>> of a gene from any species, using BioPerl?
>>
>> For example given such genes names, we want to
>> know the chromosomes, strand, start_pos, end_pos:
>>
>> C53H9.2 (C. Elegans)
>> CBG22213 (C Brigs)
>> cr01.sctg20.wum.79 (C. Reria)
>> ENSG00000064655 (H. Sapiens)
>> YGL099W (S. Cerevisieae)
>>
>> I am thinking if there already exist
>> any module to do such task.
>
> You might want to look at the Ensembl perl api (and perhaps the mart
> api, also).
>
> Sean
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