[Bioperl-l] protein pattern scan

[Christopher Fields]

This is covered the FAQ:

http://www.bioperl.org/wiki/FAQ#How_do_I_do_motif_searches_with_BioPerl.3F_Can_I_do_.22find_all_sequences_that_are_75.25_identical.22_to_a_given_motif.3F

chris

---- Original message ----
>Date: Mon, 11 Aug 2008 18:32:20 +0200
>From: Laurent Manchon <lmanchon at univ-montp2.fr>  
>Subject: [Bioperl-l] protein pattern scan  
>To: bioperl-l at lists.open-bio.org
>
>Hi,
>
>do you know if it's possible to search protein motif in a multifasta 
>protein file
>using bioperl to return the motif, the position and the name of the 
>corresponding sequence ?
>
>thank you for your help.
>
>
>+---------------------------------------------+
>  Laurent Manchon
>  Email: lmanchon at univ-montp2.fr
>+---------------------------------------------+
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