[Bioperl-l] Help for extracting CDS sequences from FASTA form
sheng zhao
harryzs1981 at yahoo.com.cn
Fri Sep 21 14:40:55 UTC 2007
Dear all:
I have got a set of DAN sequences in FASTA form as following:
>gnl|UG|Bt#S37443275 Bos taurus cathelicidin 4, mRNA (cDNA clone MGC:157131 IMAGE:8442308), complete cds /cds=p(18,452) /gb=BC133480 /gi=126717494 /ug=Bt.3 /len=572
TAGGCAGACTGGGGACCATGCAAACCCAGAGGGCCAGCCTCTCACTGGGGCGGTGGTCAC..................................
>gnl|UG|Bt#S11932596 B.taurus mRNA for interleukin-5 /cds=p(1,405) /gb=Z67872 /gi=1113120 /ug=Bt.5 /len=405
TAGGCAGACTGGGGACCATGCAAACCCAGAGGGCCAGCCTCTCACTGGGGCGGTGGTCAC...................................
>gnl|UG|Bt#S29311270 Hw_Loin_11_0520_C11 Bos taurus CF-24-HW loin cDNA library Bos taurus cDNA, mRNA sequence /gb=DV796078 /gi=82648993 /ug=Bt.10 /len=1332
AACCGGGAGCACGCCGTGTACCCGCCAGTGGGGCTTCTGAGGACATGGGGGCCACCGTCA...................................
I would like to know how to extract CDS sequences from them? Or a Perl program?
Thank you for your reply and help.
Sincerely yours,
Best wishes,
Harry
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