[Bioperl-l] ESTs in EST format
Alberto Davila
davila at ioc.fiocruz.br
Wed Jul 4 17:11:20 UTC 2007
Dear All,
I am trying to get all ESTs from a given species (eg: Trypanosoma
brucei) from Genbank in EST format (eg:
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucest&id=10280980)...
while using Entrez I can "display" individual EST entries in EST format,
this "EST format" is not an option in the main "display" menu for batch
download ...
I dont see the EST format listed
(http://www.bioperl.org/wiki/Sequence_formats) among the ones that SeqIO
deal with, so wonder there would another BioPerl module to do this ? any
tips, would be greatly appreciated ;-)
Kindest regards, Alberto
More information about the Bioperl-l
mailing list