[Bioperl-l] ESTs in EST format

Alberto Davila davila at ioc.fiocruz.br
Wed Jul 4 17:11:20 UTC 2007


Dear All,

I am trying to get all ESTs from a given species (eg: Trypanosoma 
brucei) from Genbank in EST format (eg: 
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucest&id=10280980)... 
while using Entrez I can "display" individual EST entries in EST format, 
this "EST format" is not an option in the main "display" menu for batch 
download ...

I dont see the EST format listed 
(http://www.bioperl.org/wiki/Sequence_formats) among the ones that SeqIO 
deal with, so wonder there would another BioPerl module to do this ? any 
tips, would be greatly appreciated ;-)

Kindest regards, Alberto



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